STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
secDFProtein-export membrane protein. (739 aa)    
Predicted Functional Partners:
secE
Preprotein translocase subunit.
  
 0.999
secY
Preprotein translocase subunit.
  
 0.999
secG
Probable protein-export membrane protein secG;, Preprotein translocase SecG subunit, Preprotein translocase SecG subunit, secG: preprotein translocase, SecG subunit.
   
 0.999
yrbF
Conserved hypothetical protein.
  
 
 0.998
oxaAB
Sec-independent factor for membrane protein insertion (YidC/SpoIIIJ family).
   
 0.997
secA
Translocase binding subunit (ATPase).
  
 
 0.997
spoIIIJ
Inner membrane protein oxaA;, Membrane insertion protein, OxaA/YidC, 60Kd inner membrane protein.
   
 0.997
ftsY
Signal recognition particle (docking protein).
    
 0.963
ffh
Signal recognition particle-like (SRP) GTPase.
  
 
 0.958
pheT
phenylalanyl-tRNA synthetase (beta subunit).
  
 
 0.874
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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