STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yszBConserved hypothetical protein containing an ACT domain; not chorismate mutase. (149 aa)    
Predicted Functional Partners:
pheA
Prephenate dehydratase.
 
 
 0.996
tyrA
Prephenate dehydrogenase.
     
 0.912
trpE
Anthranilate synthase.
     
  0.900
aroH
Chorismate mutase.
     
  0.900
aroF
Chorismate synthase.
     
  0.900
nrpsH
Para-aminobenzoate/anthranilate synthase glutamine amidotransferase componentII.
     
  0.900
nrpsG
Para-aminobenzoate synthase, component I.
     
  0.900
aroA
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; chorismate mutase-isozyme 3.
     
  0.900
obg
GTPase involved in cell partioning and DNA repair.
  
  
 0.808
pabB
4-amino-4-deoxychorismate synthase (para-aminobenzoate synthase).
     
  0.800
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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