STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnhCRibonuclease HIII. (313 aa)    
Predicted Functional Partners:
rnhB
Ribonuclease HII.
    
 0.908
ypdQ
Conserved hypothetical protein.
      
 0.792
yshA
Conserved hypothetical protein.
  
    0.735
yshB
Putative integral inner membrane protein.
     
 0.727
rnpA
Protein component of ribonuclease P (RNase P) (substrate specificity).
      
 0.684
rnmV
Ribonuclease M5.
      
 0.682
polX
YshC; 'information pathways; DNA restriction/modification and repair'.
       0.675
pnpA
Polynucleotide phosphorylase (PNPase).
  
   
 0.641
mutSB
Putative DNA mismatch repair enzyme.
       0.639
yhaM
3'-5' exonuclease.
 
   
 0.574
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.