STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytxKPutative nucleic acid methyltransferase. (328 aa)    
Predicted Functional Partners:
tpx
Putative peroxiredoxin.
  
    0.809
coiA
Protein involved in establishment of DNA transport in competence; Competence-induced protein CoiA-like, Competence protein CoiA-like family.
  
     0.762
ezrA
Negative regulator of FtsZ ring formation.
 
     0.762
ypiA
Conserved hypothetical protein.
  
     0.758
ydfJ
Putative proton metabolite efflux transporter.
      
 0.700
ydiL
Putative membrane protease.
 
     0.696
ykzG
Conserved hypothetical protein; UPF0356, DUF1447 family.
  
     0.690
ecsB
ABC transporter (membrane protein).
 
     0.676
yerH
Putative lipoprotein.
  
     0.662
ackA
Acetate kinase.
  
    0.654
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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