STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytrATranscriptional regulator (GntR family). (130 aa)    
Predicted Functional Partners:
ytrB
ABC transporter (ATP-binding protein).
 
  
 0.953
ytrC2
ABC transporter, permease component.
 
  
 0.832
ytrD
YtrD; 'intermediary metabolism; Metabolism of carbohydrates and related molecules; Specific pathways'.
  
  
 0.800
ytrF
Metabolite permease.
  
  
 0.788
ytrC1
YtrC fragment; 'intermediary metabolism; Metabolism of carbohydrates and related molecules; Specific pathways'.
  
  
 0.765
ytrE
ABC transporter (ATP-binding protein).
  
  
 0.733
bceR
Two-component system, OmpR family, bacitracin resistance response regulator BceR; Two-component response regulator controlling resistance to antibiotics affecting the envelope [YtsB].
  
    0.501
bceS
Two-component sensor histidine kinase controlling resistance to antibiotics affecting the envelope [YtsA].
       0.491
yhcG
Putative ABC transporter ATP-binding protein.
 
  
 0.462
bceA
Bacitracin ABC efflux transporter (ATP-binding protein).
 
  
 0.462
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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