Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ytrATranscriptional regulator (GntR family). (130 aa)    
Predicted Functional Partners:
ytrB
ABC transporter (ATP-binding protein).
 
  
 0.972
ytrC2
ABC transporter, permease component.
 
  
 0.879
ytrF
Metabolite permease.
  
  
 0.875
ytrD
YtrD; 'intermediary metabolism; Metabolism of carbohydrates and related molecules; Specific pathways'.
  
  
 0.855
ytrE
ABC transporter (ATP-binding protein).
  
  
 0.829
ytrC1
YtrC fragment; 'intermediary metabolism; Metabolism of carbohydrates and related molecules; Specific pathways'.
  
  
 0.810
yhcG
Putative ABC transporter ATP-binding protein.
 
  
 0.574
bceS
Two-component sensor histidine kinase controlling resistance to antibiotics affecting the envelope [YtsA].
     
 0.550
bceR
Two-component system, OmpR family, bacitracin resistance response regulator BceR; Two-component response regulator controlling resistance to antibiotics affecting the envelope [YtsB].
  
    0.504
ytzC
Conserved hypothetical protein.
       0.460
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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