STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ythBPutative cytochrome bd ubiquinol oxidase subunit II. (346 aa)    
Predicted Functional Partners:
ythA
Putative cytochrome d oxidase subunit.
 
 0.999
cydA
Cytochrome bd ubiquinol oxidase (subunit I).
  
 0.995
cydB
Cytochrome bd ubiquinol oxidase (subunit II).
     
  0.900
cydC
ABC membrane transporter (ATP-binding protein) required for cytochrome bd function.
  
  
 0.843
cydD
ABC membrane transporter (ATP-binding protein) required for cytochrome bd function.
  
  
 0.821
RBAM027740
RBAM027740; Protein of unknown function DUF1540, Domain of Unknown Function (DUF1540).
 
     0.765
yraD
Putative spore coat protein.
  
     0.598
yraF
Putative spore coat protein.
  
     0.529
yflT
Heat stress induced protein.
  
     0.528
rpmEB
Ribosomal protein L31.
       0.504
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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