STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yuaEConserved hypothetical protein. (162 aa)    
Predicted Functional Partners:
yfiT
Metal-dependent hydrolase.
  
   
 0.843
yrdA
Conserved hypothetical protein.
  
   
 0.843
yjoA
Conserved hypothetical protein.
  
   
 0.815
yisT
Uncharacterized protein yisT;, DinB, DinB family.
      
 0.779
spoIIR
Stage II sporulation protein R;, Sporulation stage II, protein R, Stage II sporulation protein R (spore_II_R), spore_II_R: stage II sporulation protein R.
      
 0.588
sacA
Sucrase-6-phosphate hydrolase.
      
 0.573
yxbF
Uncharacterized HTH-type transcriptional regulator yxbF;, Homeodomain-related, Bacterial regulatory proteins, tetR family.
  
     0.558
yqjY
Putative acetyltransferase.
  
     0.553
ydaL
Conserved hypothetical protein.
  
     0.551
yisL
Putative integral inner membrane protein.
      
 0.534
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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