yqxH1 protein (Bacillus amyloliquefaciens DSM 7 ATCC 23350)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

yqxH1

Probable holin; Lysis protein;, Holin, toxin secretion/phage lysis, Holin family, holin_tox_secr: toxin secretion/phage lysis holin. (135 aa)

Predicted Functional Partners:

BAMF_2900

0.792

ytkC

0.774

gp03

0.765

BAMF_3098

0.761

BAMF_3097

0.760

polL

0.752

BAMF_3093

0.751

BAMF_3080

0.724

gp02

0.669

yomR3

0.668

Your Current Organism:

Bacillus amyloliquefaciens DSM 7 ATCC 23350

NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAMF_2900	BAMF_3093	BAMF_2900	BAMF_3093	Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	SWI/SNF chromatin-remodeling complex subunit snf22; SWI/SNF complex subunit snf22; ATP-dependent helicase snf22;, SNF2-related.	0.730
BAMF_2900	BAMF_3097	BAMF_2900	BAMF_3097	Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	Conserved phage-associated protein.	0.709
BAMF_2900	BAMF_3098	BAMF_2900	BAMF_3098	Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	Putative protein p51.	0.751
BAMF_2900	gp02	BAMF_2900	BAMF_0846	Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	COG4626: putative terminase large subunit;, Phage Terminase, Phage Terminase.	0.783
BAMF_2900	gp03	BAMF_2900	BAMF_0847	Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	Portal protein; GP3;, Phage portal protein, HK97, Phage portal protein, portal_HK97: phage portal protein, HK97 family.	0.780
BAMF_2900	polL	BAMF_2900	BAMF_3095	Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	DNA-dependent DNA polymerase, family A; DNA-directed DNA polymerase.	0.706
BAMF_2900	yqxH1	BAMF_2900	BAMF_2890	Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	Probable holin; Lysis protein;, Holin, toxin secretion/phage lysis, Holin family, holin_tox_secr: toxin secretion/phage lysis holin.	0.792
BAMF_2900	ytkC	BAMF_2900	BAMF_2846	Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	Putative autolytic amidase.	0.758
BAMF_3080	BAMF_3093	BAMF_3080	BAMF_3093	UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid-adding enzyme;, Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	SWI/SNF chromatin-remodeling complex subunit snf22; SWI/SNF complex subunit snf22; ATP-dependent helicase snf22;, SNF2-related.	0.720
BAMF_3080	BAMF_3097	BAMF_3080	BAMF_3097	UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid-adding enzyme;, Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	Conserved phage-associated protein.	0.699
BAMF_3080	BAMF_3098	BAMF_3080	BAMF_3098	UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid-adding enzyme;, Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	Putative protein p51.	0.743
BAMF_3080	gp02	BAMF_3080	BAMF_0846	UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid-adding enzyme;, Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	COG4626: putative terminase large subunit;, Phage Terminase, Phage Terminase.	0.783
BAMF_3080	gp03	BAMF_3080	BAMF_0847	UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid-adding enzyme;, Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	Portal protein; GP3;, Phage portal protein, HK97, Phage portal protein, portal_HK97: phage portal protein, HK97 family.	0.778
BAMF_3080	polL	BAMF_3080	BAMF_3095	UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid-adding enzyme;, Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	DNA-dependent DNA polymerase, family A; DNA-directed DNA polymerase.	0.697
BAMF_3080	yqxH1	BAMF_3080	BAMF_2890	UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid-adding enzyme;, Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	Probable holin; Lysis protein;, Holin, toxin secretion/phage lysis, Holin family, holin_tox_secr: toxin secretion/phage lysis holin.	0.724
BAMF_3080	ytkC	BAMF_3080	BAMF_2846	UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid-adding enzyme;, Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	Putative autolytic amidase.	0.746
BAMF_3093	BAMF_2900	BAMF_3093	BAMF_2900	SWI/SNF chromatin-remodeling complex subunit snf22; SWI/SNF complex subunit snf22; ATP-dependent helicase snf22;, SNF2-related.	Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	0.730
BAMF_3093	BAMF_3080	BAMF_3093	BAMF_3080	SWI/SNF chromatin-remodeling complex subunit snf22; SWI/SNF complex subunit snf22; ATP-dependent helicase snf22;, SNF2-related.	UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid-adding enzyme;, Phage major tail protein phi13, maj_tail_phi13: phage major tail protein, phi13 family.	0.720
BAMF_3093	BAMF_3097	BAMF_3093	BAMF_3097	SWI/SNF chromatin-remodeling complex subunit snf22; SWI/SNF complex subunit snf22; ATP-dependent helicase snf22;, SNF2-related.	Conserved phage-associated protein.	0.784
BAMF_3093	BAMF_3098	BAMF_3093	BAMF_3098	SWI/SNF chromatin-remodeling complex subunit snf22; SWI/SNF complex subunit snf22; ATP-dependent helicase snf22;, SNF2-related.	Putative protein p51.	0.784

page 1 of 5

Server load: low (36%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About