STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yufOPutative carbohydrate ABC transporter (ATP-binding protein). (510 aa)    
Predicted Functional Partners:
yufQ
Putative permease of ABC transporter.
 
 0.999
yufP
Putative permease of ABC transporter.
 
 
 0.998
yufN
Putative lipoprotein.
 
 
 0.992
RBAM_011050
Basic membrane protein A2; Immunodominant antigen P39; Flags: Precursor;, Basic membrane lipoprotein, Basic membrane protein.
 
 
 0.985
med
Positive regulator of comK.
 
  
 0.906
ymfC
Putative transcriptional regulator (GntR family).
  
    0.725
cdd
Cytidine/deoxycytidine deaminase.
 
  
 0.454
spoIIIE
Spore DNA translocase.
       0.447
RBAM16700
RBAM16700; 'intermediary metabolism; Metabolism of amino acids and related molecules'.
       0.447
ymfH
Putative processing protease.
       0.447
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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