STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhbCIsochorismate synthase. (398 aa)    
Predicted Functional Partners:
dhbB
Isochorismatase.
 
 
 0.999
dhbE
2,3-dihydroxybenzoate-AMP ligase (enterobactin synthetase component E).
 
  
 0.998
ituC
Iturin A synthetase C (B. subtilis); 'other functions; Antibiotic production; Nonribosomal synthesis of iturin A'.
 
  
 0.996
dhbF
Siderophore 2,3-dihydroxybenzoate-glycine-threonine trimeric ester bacillibactin synthetase.
 
  
 0.994
dhbA
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-acyl carrier protein reductase;, Short-chain dehydrogenase/reductase SDR, short chain dehydrogenase, 3oxo_ACP_reduc: 3-oxoacyl-(acyl-carrier-protein) reductase.
 
  
 0.994
menD
2-oxoglutarate decarboxylase and 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase.
 
 0.978
srfAA
Non-ribosomal surfactin synthetase SrfAA.
 
  
 0.957
srfAB
Nonribosomal surfactin synthetase SrfAB; Bacitracin synthetase 1; BA1; Includes: RecName: Full=ATP-dependent isoleucine adenylase; IleA; Isoleucine activase; Includes: RecName: Full=ATP-dependent cysteine adenylase; CysA; Cysteine activase; Includes: RecName: Full=ATP-dependent leucine adenylase; LeuA; Leucine activase; Includes: RecName: Full=ATP-dependent glutamate adenylase; GluA; Glutamate activase; Includes: RecName: Full=ATP-dependent isoleucine adenylase; IleA; Isoleucine activase; Includes: RecName: Full=Glutamate racemase;, Amino acid adenylation, AMP-binding enzyme, AA-adenyl [...]
 
  
 0.957
RBAM029000
RBAM029000; 'other functions; Antibiotic production'.
 
  
 0.956
srfAC
Nonribosomal surfactin synthetase C.
 
  
 0.951
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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