STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yuiCConserved hypothetical protein. (213 aa)    
Predicted Functional Partners:
yuiB
Conserved hypothetical protein.
 
     0.791
xkdP
Putative PBSX prophage murein binding protein.
   
  
 0.670
spsD
Spore coat polysaccharide biosynthesis protein spsD;, GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family.
      
 0.603
yqgE
Putative efflux transporter.
  
     0.551
yqhR
Putative integral inner membrane protein.
  
     0.538
yabE3
SPBc2 prophage-derived uncharacterized protein yorM; Flags: Precursor;, 3D, 3D domain.
 
     0.526
gerPD
Probable spore germination protein gerPD.
  
     0.513
gerPB
Probable spore germination protein gerPB.
  
     0.513
spsE
Spore coat polysaccharide biosynthesis protein spsE;, Aldolase-type TIM barrel, NeuB family.
      
 0.508
ykuS
Conserved hypothetical protein.
  
     0.467
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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