STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yuiCConserved hypothetical protein. (213 aa)    
Predicted Functional Partners:
yuiB
Conserved hypothetical protein.
 
     0.696
xkdP
Putative PBSX prophage murein binding protein.
   
  
 0.676
yqgE
Putative efflux transporter.
  
     0.551
yqhR
Putative integral inner membrane protein.
  
     0.538
yabE3
SPBc2 prophage-derived uncharacterized protein yorM; Flags: Precursor;, 3D, 3D domain.
 
     0.526
gerPD
Probable spore germination protein gerPD.
  
     0.513
gerPB
Probable spore germination protein gerPB.
  
     0.513
ykuS
Conserved hypothetical protein.
  
     0.467
ylaJ
Putative lipoprotein.
  
     0.465
yqfX
Conserved hypothetical protein.
  
     0.463
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.