STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
liaFProtein liaF;, Cell wall-active antibiotics response protein. (243 aa)    
Predicted Functional Partners:
liaS
Sensor histidine kinase; Sensor protein vraS;, Signal transduction histidine kinase, core, Histidine kinase.
 
  
 0.988
liaR
Transcriptional regulatory protein liaR;, Signal transduction response regulator, receiver region, Response regulator receiver domain.
 
  
 0.971
liaG
Protein LiaG.
 
  
 0.964
liaH
Laminin subunit gamma-2 Laminin 5 gamma 2 subunit; Modulator of liaIHGFSR (yvqIHGFEC) operon expression, PspA/IM30, PspA/IM30 family.
 
  
 0.943
yvlB
Conserved hypothetical protein.
 
  
 0.815
liaI
Protein liaI.
  
  
 0.748
comP
Two-component sensor histidine kinase.
 
  
 0.688
yhcY
Two-component sensor histidine kinase [YhcZ].
 
  
 0.682
degS
Two-component sensor histidine kinase.
 
  
 0.678
ytoI
Conserved hypothetical protein.
  
     0.606
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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