STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvrAPutative vitamin B12 transport system, ATPase component. (408 aa)    
Predicted Functional Partners:
yvrB
Putative vitamin B12 permease.
 
 
 0.982
yvrC
Putative lipoprotein binding vitamin B12.
 
 
 0.980
yvqK
Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial; Cob(I)alamin adenosyltransferase; Methylmalonic aciduria type B protein; Flags: Precursor;, Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal, Cobalamin adenosyltransferase, PduO_Nterm: ATP:cob(I)alamin adenosyltransferase.
  
    0.895
feuC
ABC-transporter for the siderophores enterobactin and bacillibactin FeuC; 'cell envelope and cellular processes; Transport/binding proteins and lipoproteins'.
 
 
 0.894
fhuB
Ferrichrome ABC transporter (permease).
 
 
 0.894
RBAM_035820
Ferrichrome transport system permease protein fhuB;, Bacterial transport system permease protein, FecCD transport family.
 
 
 0.894
RBAM_035830
Ferrichrome transport system permease protein fhuG;, Bacterial transport system permease protein, FecCD transport family.
 
 
 0.894
feuB
Iron-uptake protein.
 
 
 0.893
fhuG
Ferrichrome ABC transporter (permease).
 
 
 0.893
RBAM_035840
Iron compound ABC transporter, substrate-binding protein FeuA; Chemotaxis response regulator protein-glutamate methylesterase 2;, Periplasmic binding protein, Periplasmic binding protein.
 
 
 0.719
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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