STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bdbDThiol-disulfide oxidoreductase. (223 aa)    
Predicted Functional Partners:
bdbC
Thiol-disulfide oxidoreductase.
 
 
 0.999
stoA
Thiol-disulfide isomerase.
  
  
 0.755
resA
Extracytoplasmic thioredoxin involved in cytochrome c maturation (lipoprotein).
  
  
 0.743
ccdA
CcdA; 'cell envelope and cellular processes; Membrane bioenergetics (electron transport chain and ATP synthase)'.
     
 0.724
coiA
Protein involved in establishment of DNA transport in competence; Competence-induced protein CoiA-like, Competence protein CoiA-like family.
   
  
 0.603
copA
Copper-exporting P-type ATPase A;, ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, E1-E2 ATPase, ATPase-IB_hvy: heavy metal translocating P-type ATPase.
 
 
 
 0.583
cadA
Zinc-transporting ATPase; Zn(2+)-translocating P-type ATPase;, ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, E1-E2 ATPase, ATPase-IB_hvy: heavy metal translocating P-type ATPase.
   
   0.543
dprA
DNA processing Smf single strand binding protein.
    
 
 0.540
polA3
DNA polymerase I.
     
 0.444
phoA
Alkaline phosphatase 4; Alkaline phosphatase IV; APase IV; Flags: Precursor;, Alkaline phosphatase-like, alpha/beta/alpha, Alkaline phosphatase.
    
 
 0.418
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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