STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvaVYvaV; Winged helix repressor DNA-binding. (177 aa)    
Predicted Functional Partners:
yqjX
Conserved hypothetical protein; 16.8: Protect16.5: Explore16.6: Maintain.
  
     0.701
ykyA
Putative chromosome partitioning protein.
  
     0.538
opuBA
Glycine betaine/carnitine/choline transport ATP-binding protein opuBA;, Glycine betaine/L-proline transport ATP-binding subunit, ABC transporter, proV: glycine betaine/L-proline transport ATP binding subunit.
  
  
 0.533
ycbP
YcbP; 'unknown; Similar to unknown proteins from B. subtilis'.
  
     0.482
yjbC
Putative thiol oxidation management factor; putative acetyltransferase.
  
     0.480
yyaD
Putative integral membrane protein; putative transporter.
  
     0.470
opuBC
Choline ABC transporter (binding protein); Choline-binding protein; Flags: Precursor;, ABC-type glycine betaine transport system, substrate-binding region, Substrate binding domain of ABC-type glycine betaine transport system.
  
  
 0.459
fliZ
Flagellar regulatory protein.
  
     0.452
yxbF
Uncharacterized HTH-type transcriptional regulator yxbF;, Homeodomain-related, Bacterial regulatory proteins, tetR family.
  
    0.442
opuCD1
Glycine betaine/carnitine/choline transport system permease protein opuCD;, Binding-protein-dependent transport systems inner membrane component, Binding-protein-dependent transport system inner membrane component.
  
  
 0.441
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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