STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBAM_031190Uncharacterized protein Rv1507c/MT1555;, WbqC-like protein family, WbqC-like protein family. (252 aa)    
Predicted Functional Partners:
ctaC
Cytochrome caa3 oxidase (subunit II).
   
 
 0.973
atpA
ATP synthase (subunit alpha, component F1).
  
 0.951
atpC
ATP synthase (subunit epsilon, F1 subunit).
  
 0.950
atpD
ATP synthase (subunit beta, component F1).
  
 0.950
atpH
ATP synthase (subunit delta, component F1).
  
 0.943
atpE
ATP synthase (subunit c, component F0).
  
 0.943
atpB
ATP synthase (subunit a, component F0).
  
 0.943
atpF
ATP synthase (subunit b, component F0).
 
 
 0.938
RBAM_031180
N-acetylglucosamine malate deacetylase 1; N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase; Phosphatidylinositol-glycan biosynthesis class L protein; PIG-L;, N-acetylglucosaminyl phosphatidylinositol deacetylase, GlcNAc-PI de-N-acetylase.
 
     0.869
RBAM_031220
NAD-dependent epimerase/dehydratase family protein; UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Galactowaldenase;, NAD(P)-binding domain, NAD dependent epimerase/dehydratase family, heptose_epim: ADP-L-glycero-D-manno-heptose-6-epimerase.
 
  
 0.821
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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