STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrGCTP synthetase. (535 aa)    
Predicted Functional Partners:
guaA
GMP synthetase.
 
 
 0.980
ndk
Nucleoside diphosphate kinase.
  
 
 0.932
rplF
Ribosomal protein L6 (BL8).
   
 
 0.896
rplE
Ribosomal protein L5 (BL6).
   
 
 0.879
rpsB
Ribosomal protein S2.
  
 
 0.863
rplW
Ribosomal protein L23.
   
 
 0.848
rplM
Ribosomal protein L13.
   
 
 0.846
rplB
Ribosomal protein L2 (BL2).
   
 
 0.817
pnpA
Polynucleotide phosphorylase (PNPase).
  
  
 0.815
argS
arginyl-tRNA synthetase.
  
  
 0.805
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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