STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bacFPutative aspartate aminotransferase (transaminase A) YwfG; LL-diaminopimelate aminotransferase; LL-DAP-aminotransferase; DAP-aminotransferase; DAP-AT;, Aminotransferase, class I/II, Aminotransferase class I and II, tyr_amTase_E: tyrosine aminotransferase. (399 aa)    
Predicted Functional Partners:
bacC
Bacilysin biosynthesis oxidoreductase.
  
 0.990
bacE
Putative bacilysin exporter bacE; Efflux protein for bacilysin excretion, self-protection against bacilysin.
  
  
 0.967
bacB
Isomerase component of bacilysin synthetase; Bacilysin biosynthesis protein bacB;, RmlC-like jelly roll fold.
  
  
 0.957
ywfH
3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-acyl carrier protein reductase;, NAD(P)-binding domain, fabG_rel: 3-oxoacyl-(acyl-carrier-protein) reductase, putative.
   
 0.930
bacD
Alanine-anticapsin ligase; Involved in bacilysin synthesis.
  
  
 0.921
ldh
L-lactate dehydrogenase.
  
 
 0.827
bacA
Bacilysin biosynthesis protein bacA;, Prephenate dehydratase.
  
  
 0.787
albG
Antilisterial bacteriocin subtilosin biosynthesis protein albG.
      
 0.761
mtnU
MtnU; 'unknown; Similar to unknown proteins from B. subtilis'.
 
  
 0.617
csn
Chitosanase.
      
 0.592
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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