STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hbs3Non-specific DNA-binding protein Hbsu; ATP-dependent RNA helicase dbpA;, DEAD-like helicase, N-terminal, DEAD/DEAH box helicase. (475 aa)    
Predicted Functional Partners:
cshA
DEAD-box ATP-dependent RNA helicase ydbR;, DEAD-like helicase, N-terminal, DEAD/DEAH box helicase.
  
  
 
0.911
pnpA
Polynucleotide phosphorylase (PNPase).
  
 
 0.890
baeJ
Bacillaene synthesis; hybrid NRPS/PKS protein.
   
 0.817
rplD
Ribosomal protein L4.
   
 0.721
rplC
Ribosomal protein L3 (BL3).
   
 
 0.717
fusA
Elongation factor G.
   
 0.703
RBAM_036230
Hypothetical protein RBAM_036230.
  
    0.696
ppiB
Peptidyl-prolyl isomerase.
 
 0.694
rplJ
Ribosomal protein L10 (BL5).
   
 
 0.666
rplM
Ribosomal protein L13.
   
 0.658
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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