STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yycOConserved hypothetical protein. (250 aa)    
Predicted Functional Partners:
yycP
Conserved hypothetical protein.
  
    0.905
ytrC2
ABC transporter, permease component.
  
     0.700
ydaN
Putative regulator.
  
     0.694
yclG
Putative uronase.
  
     0.693
ywhK
Factor interacting with DNA helicase PcrA; Uncharacterized protein ywhL;, WD40/YVTN repeat-like-containing domain.
 
     0.681
xkdO2
Partial Phage-like element PBSX protein xkdO; Lytic transglycosylase-like, catalytic, Transglycosylase SLT domain.
  
     0.679
xpf3
Putative RNA polymerase PBSX sigma factor-like.
  
     0.678
ywhL
Uncharacterized protein ywhL;, WD40/YVTN repeat-like-containing domain.
 
     0.668
spsB
Spore coat polysaccharide biosynthesis protein spsB;, Capsule polysaccharide biosynthesis, Capsule polysaccharide biosynthesis protein.
  
     0.662
yobI3
Hypothetical protein.
  
     0.655
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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