STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG36_04895Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)    
Predicted Functional Partners:
BG36_04900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.947
BG36_09430
TniB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.790
BG36_18635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.778
BG36_04905
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.661
BG36_09145
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.627
BG36_04775
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.604
BG36_09185
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.524
BG36_04910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.475
BG36_05025
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
BG36_09150
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.412
Your Current Organism:
Aquamicrobium defluvii
NCBI taxonomy Id: 69279
Other names: A. defluvii, CIP 105610, DSM 11603, strain NKK
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.