STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG36_09445DNA invertase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)    
Predicted Functional Partners:
BG36_04775
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.586
BG36_05025
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.571
BG36_09385
Replication initiation protein RepC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.514
BG36_09170
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.513
BG36_13130
Replication initiation protein RepC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
BG36_16395
Replication initiation protein RepC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
BG36_09390
Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.
  
     0.494
BG36_05030
Plasmid partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.
  
     0.493
BG36_05035
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
BG36_15630
Replication initiation protein RepC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
Your Current Organism:
Aquamicrobium defluvii
NCBI taxonomy Id: 69279
Other names: A. defluvii, CIP 105610, DSM 11603, strain NKK
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.