STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG36_11255Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)    
Predicted Functional Partners:
BG36_11245
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.913
BG36_11250
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.913
BG36_03555
Holin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.816
BG36_03535
Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.809
BG36_11235
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S14 family.
 
    0.807
BG36_03540
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.804
BG36_11225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.803
BG36_11230
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.792
BG36_11220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.786
BG36_03525
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.705
Your Current Organism:
Aquamicrobium defluvii
NCBI taxonomy Id: 69279
Other names: A. defluvii, CIP 105610, DSM 11603, strain NKK
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.