STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG36_21555Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)    
Predicted Functional Partners:
BG36_21550
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.976
BG36_16290
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.804
BG36_12810
5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.684
BG36_12820
Inosose dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.669
BG36_12825
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.
 
  
 0.662
BG36_21545
L-glyceraldehyde 3-phosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.660
BG36_16300
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.
  
  
 0.618
BG36_08125
Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.604
BG36_22215
Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.604
BG36_14875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.579
Your Current Organism:
Aquamicrobium defluvii
NCBI taxonomy Id: 69279
Other names: A. defluvii, CIP 105610, DSM 11603, strain NKK
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.