STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG36_22100Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)    
Predicted Functional Partners:
BG36_22105
Preprotein translocase subunit TatC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.794
BG36_22095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.718
BG36_22110
Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.699
BG36_22090
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.698
BG36_15435
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.595
BG36_15430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.587
BG36_12970
Lipid carrier; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.582
BG36_15440
Pseudoazurin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.567
BG36_16660
Pseudoazurin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.560
BG36_22145
Pseudoazurin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.556
Your Current Organism:
Aquamicrobium defluvii
NCBI taxonomy Id: 69279
Other names: A. defluvii, CIP 105610, DSM 11603, strain NKK
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.