G3N405_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3N405_GASAC

Cytochrome c oxidase subunit 6C. (79 aa)

Predicted Functional Partners:

G3NTE5_GASAC

0.999

G3P7C3_GASAC

0.999

COX5A

0.999

COX5B

0.998

ENSGACP00000002517

0.998

G3PTX8_GASAC

0.998

G3Q2D6_GASAC

0.998

COX2

0.998

G3NK01_GASAC

0.997

G3P8F3_GASAC

0.997

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COX2	COX5A	ENSGACP00000027663	ENSGACP00000019415	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 5Ab.	0.993
COX2	COX5B	ENSGACP00000027663	ENSGACP00000002508	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 5B.	0.993
COX2	ENSGACP00000002517	ENSGACP00000027663	ENSGACP00000002517	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	annotation not available	0.993
COX2	G3N405_GASAC	ENSGACP00000027663	ENSGACP00000000022	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 6C.	0.998
COX2	G3NK01_GASAC	ENSGACP00000027663	ENSGACP00000005663	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 4I2.	0.992
COX2	G3NTE5_GASAC	ENSGACP00000027663	ENSGACP00000008613	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Uncharacterized protein.	0.992
COX2	G3P7C3_GASAC	ENSGACP00000027663	ENSGACP00000013497	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 7C.	0.999
COX2	G3P8F3_GASAC	ENSGACP00000027663	ENSGACP00000013877	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.986
COX2	G3PTX8_GASAC	ENSGACP00000027663	ENSGACP00000021065	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 4I1.	0.993
COX2	G3Q2D6_GASAC	ENSGACP00000027663	ENSGACP00000024035	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Ubiquinol-cytochrome c reductase, complex III subunit VII.	0.986
COX5A	COX2	ENSGACP00000019415	ENSGACP00000027663	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	0.993
COX5A	COX5B	ENSGACP00000019415	ENSGACP00000002508	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 5B.	0.997
COX5A	ENSGACP00000002517	ENSGACP00000019415	ENSGACP00000002517	Cytochrome c oxidase subunit 5Ab.	annotation not available	0.996
COX5A	G3N405_GASAC	ENSGACP00000019415	ENSGACP00000000022	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 6C.	0.999
COX5A	G3NK01_GASAC	ENSGACP00000019415	ENSGACP00000005663	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 4I2.	0.995
COX5A	G3P7C3_GASAC	ENSGACP00000019415	ENSGACP00000013497	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 7C.	0.999
COX5A	G3P8F3_GASAC	ENSGACP00000019415	ENSGACP00000013877	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.993
COX5A	G3PTX8_GASAC	ENSGACP00000019415	ENSGACP00000021065	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 4I1.	0.995
COX5A	G3Q2D6_GASAC	ENSGACP00000019415	ENSGACP00000024035	Cytochrome c oxidase subunit 5Ab.	Ubiquinol-cytochrome c reductase, complex III subunit VII.	0.998
COX5B	COX2	ENSGACP00000002508	ENSGACP00000027663	Cytochrome c oxidase subunit 5B.	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	0.993