STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3N469_GASACSi:ch73-142c19.1. (482 aa)    
Predicted Functional Partners:
G3P7H1_GASAC
Cyclin H; Belongs to the cyclin family.
    
 0.980
G3P0R7_GASAC
CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.
   
 0.971
G3NZD7_GASAC
General transcription factor IIH, polypeptide 3.
    
 0.970
G3PTP8_GASAC
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
   
 0.966
G3PFN5_GASAC
Excision repair cross-complementation group 2.
    
 0.965
G3Q6T9_GASAC
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.965
G3NHZ7_GASAC
General transcription factor IIH subunit.
   
 0.962
G3NQB0_GASAC
General transcription factor IIH, polypeptide 1.
   
 0.961
G3NWX0_GASAC
General transcription factor IIE, polypeptide 1, alpha.
    
 0.961
G3PR46_GASAC
Excision repair cross-complementation group 3.
    
 0.961
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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