G3N6S7_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G3N6S7_GASAC

IGv domain-containing protein. (232 aa)

Predicted Functional Partners:

PES1

0.769

G3PJ85_GASAC

0.750

G3P2Z1_GASAC

0.733

WDR12

0.628

G3PKH6_GASAC

0.623

G3NSB9_GASAC

0.609

BOP1

0.609

G3N523_GASAC

0.589

G3P7T0_GASAC

0.589

G3QBL6_GASAC

0.585

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	G3N523_GASAC	ENSGACP00000013773	ENSGACP00000000393	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.981
BOP1	G3N6S7_GASAC	ENSGACP00000013773	ENSGACP00000001002	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	IGv domain-containing protein.	0.609
BOP1	G3P2Z1_GASAC	ENSGACP00000013773	ENSGACP00000011964	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Testis expressed 10.	0.793
BOP1	G3P7T0_GASAC	ENSGACP00000013773	ENSGACP00000013654	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.981
BOP1	G3PJ85_GASAC	ENSGACP00000013773	ENSGACP00000017664	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD repeat domain 18.	0.967
BOP1	G3PKH6_GASAC	ENSGACP00000013773	ENSGACP00000018106	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.991
BOP1	G3QBL6_GASAC	ENSGACP00000013773	ENSGACP00000027282	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.933
BOP1	PES1	ENSGACP00000013773	ENSGACP00000012290	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
BOP1	WDR12	ENSGACP00000013773	ENSGACP00000018233	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
G3N523_GASAC	BOP1	ENSGACP00000000393	ENSGACP00000013773	Guanine nucleotide binding protein-like 3 (nucleolar).	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.981
G3N523_GASAC	G3N6S7_GASAC	ENSGACP00000000393	ENSGACP00000001002	Guanine nucleotide binding protein-like 3 (nucleolar).	IGv domain-containing protein.	0.589
G3N523_GASAC	G3NSB9_GASAC	ENSGACP00000000393	ENSGACP00000008236	Guanine nucleotide binding protein-like 3 (nucleolar).	Centrosomal protein 152.	0.981
G3N523_GASAC	G3P2Z1_GASAC	ENSGACP00000000393	ENSGACP00000011964	Guanine nucleotide binding protein-like 3 (nucleolar).	Testis expressed 10.	0.960
G3N523_GASAC	G3P7T0_GASAC	ENSGACP00000000393	ENSGACP00000013654	Guanine nucleotide binding protein-like 3 (nucleolar).	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.984
G3N523_GASAC	G3PJ85_GASAC	ENSGACP00000000393	ENSGACP00000017664	Guanine nucleotide binding protein-like 3 (nucleolar).	WD repeat domain 18.	0.984
G3N523_GASAC	G3PKH6_GASAC	ENSGACP00000000393	ENSGACP00000018106	Guanine nucleotide binding protein-like 3 (nucleolar).	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.997
G3N523_GASAC	G3QBL6_GASAC	ENSGACP00000000393	ENSGACP00000027282	Guanine nucleotide binding protein-like 3 (nucleolar).	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.894
G3N523_GASAC	PES1	ENSGACP00000000393	ENSGACP00000012290	Guanine nucleotide binding protein-like 3 (nucleolar).	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.996
G3N523_GASAC	WDR12	ENSGACP00000000393	ENSGACP00000018233	Guanine nucleotide binding protein-like 3 (nucleolar).	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.987
G3N6S7_GASAC	BOP1	ENSGACP00000001002	ENSGACP00000013773	IGv domain-containing protein.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.609