G3N6U5_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G3N6U5_GASAC

Uncharacterized protein. (1462 aa)

Predicted Functional Partners:

RAB15

0.701

G3NVZ0_GASAC

0.701

G3NY40_GASAC

0.701

G3P839_GASAC

0.701

G3PBE0_GASAC

0.701

G3PDV4_GASAC

0.701

G3PXD1_GASAC

0.701

G3PZW0_GASAC

0.701

G3NB64_GASAC

0.698

G3NX23_GASAC

0.698

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N6U5_GASAC	G3NB64_GASAC	ENSGACP00000001020	ENSGACP00000002560	Uncharacterized protein.	GRB2 associated, regulator of MAPK1.	0.698
G3N6U5_GASAC	G3NVZ0_GASAC	ENSGACP00000001020	ENSGACP00000009509	Uncharacterized protein.	RAB10, member RAS oncogene family.	0.701
G3N6U5_GASAC	G3NX23_GASAC	ENSGACP00000001020	ENSGACP00000009892	Uncharacterized protein.	GRB2 associated, regulator of MAPK1-like.	0.698
G3N6U5_GASAC	G3NY40_GASAC	ENSGACP00000001020	ENSGACP00000010260	Uncharacterized protein.	RAB15, member RAS oncogene family.	0.701
G3N6U5_GASAC	G3P839_GASAC	ENSGACP00000001020	ENSGACP00000013763	Uncharacterized protein.	Multiple EGF-like-domains 8.	0.701
G3N6U5_GASAC	G3PBE0_GASAC	ENSGACP00000001020	ENSGACP00000014914	Uncharacterized protein.	Uncharacterized protein.	0.701
G3N6U5_GASAC	G3PDV4_GASAC	ENSGACP00000001020	ENSGACP00000015778	Uncharacterized protein.	RAB13, member RAS oncogene family.	0.701
G3N6U5_GASAC	G3PXD1_GASAC	ENSGACP00000001020	ENSGACP00000022270	Uncharacterized protein.	RAB8A, member RAS oncogene family.	0.701
G3N6U5_GASAC	G3PZW0_GASAC	ENSGACP00000001020	ENSGACP00000023150	Uncharacterized protein.	Uncharacterized protein.	0.701
G3N6U5_GASAC	RAB15	ENSGACP00000001020	ENSGACP00000007901	Uncharacterized protein.	RAB15, member RAS oncogene family.	0.701
G3NB64_GASAC	G3N6U5_GASAC	ENSGACP00000002560	ENSGACP00000001020	GRB2 associated, regulator of MAPK1.	Uncharacterized protein.	0.698
G3NVZ0_GASAC	G3N6U5_GASAC	ENSGACP00000009509	ENSGACP00000001020	RAB10, member RAS oncogene family.	Uncharacterized protein.	0.701
G3NX23_GASAC	G3N6U5_GASAC	ENSGACP00000009892	ENSGACP00000001020	GRB2 associated, regulator of MAPK1-like.	Uncharacterized protein.	0.698
G3NY40_GASAC	G3N6U5_GASAC	ENSGACP00000010260	ENSGACP00000001020	RAB15, member RAS oncogene family.	Uncharacterized protein.	0.701
G3P839_GASAC	G3N6U5_GASAC	ENSGACP00000013763	ENSGACP00000001020	Multiple EGF-like-domains 8.	Uncharacterized protein.	0.701
G3PBE0_GASAC	G3N6U5_GASAC	ENSGACP00000014914	ENSGACP00000001020	Uncharacterized protein.	Uncharacterized protein.	0.701
G3PBE0_GASAC	G3PXD1_GASAC	ENSGACP00000014914	ENSGACP00000022270	Uncharacterized protein.	RAB8A, member RAS oncogene family.	0.900
G3PDV4_GASAC	G3N6U5_GASAC	ENSGACP00000015778	ENSGACP00000001020	RAB13, member RAS oncogene family.	Uncharacterized protein.	0.701
G3PXD1_GASAC	G3N6U5_GASAC	ENSGACP00000022270	ENSGACP00000001020	RAB8A, member RAS oncogene family.	Uncharacterized protein.	0.701
G3PXD1_GASAC	G3PBE0_GASAC	ENSGACP00000022270	ENSGACP00000014914	RAB8A, member RAS oncogene family.	Uncharacterized protein.	0.900