G3N6V1_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3N6V1_GASAC

TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (625 aa)

Predicted Functional Partners:

G3PLL3_GASAC

0.991

G3PHG0_GASAC

0.990

G3NG30_GASAC

0.989

G3NKQ0_GASAC

0.989

G3NT44_GASAC

0.989

G3PBR1_GASAC

0.989

G3PZ04_GASAC

0.989

G3QAL9_GASAC

0.988

G3QBC4_GASAC

0.988

G3PD40_GASAC

0.986

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N6V1_GASAC	G3NG30_GASAC	ENSGACP00000001026	ENSGACP00000004285	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.989
G3N6V1_GASAC	G3NKQ0_GASAC	ENSGACP00000001026	ENSGACP00000005913	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.989
G3N6V1_GASAC	G3NT44_GASAC	ENSGACP00000001026	ENSGACP00000008512	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.989
G3N6V1_GASAC	G3PBR1_GASAC	ENSGACP00000001026	ENSGACP00000015035	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.989
G3N6V1_GASAC	G3PD40_GASAC	ENSGACP00000001026	ENSGACP00000015514	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	SPT3 homolog, SAGA and STAGA complex component.	0.986
G3N6V1_GASAC	G3PHG0_GASAC	ENSGACP00000001026	ENSGACP00000017035	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	SPT7 like, STAGA complex gamma subunit.	0.990
G3N6V1_GASAC	G3PLL3_GASAC	ENSGACP00000001026	ENSGACP00000018494	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.991
G3N6V1_GASAC	G3PZ04_GASAC	ENSGACP00000001026	ENSGACP00000022844	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.989
G3N6V1_GASAC	G3QAL9_GASAC	ENSGACP00000001026	ENSGACP00000026935	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	Transcription initiation factor TFIID subunit.	0.988
G3N6V1_GASAC	G3QBC4_GASAC	ENSGACP00000001026	ENSGACP00000027190	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	SPT20 homolog, SAGA complex component.	0.988
G3NG30_GASAC	G3N6V1_GASAC	ENSGACP00000004285	ENSGACP00000001026	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.989
G3NG30_GASAC	G3NKQ0_GASAC	ENSGACP00000004285	ENSGACP00000005913	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
G3NG30_GASAC	G3NT44_GASAC	ENSGACP00000004285	ENSGACP00000008512	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
G3NG30_GASAC	G3PBR1_GASAC	ENSGACP00000004285	ENSGACP00000015035	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
G3NG30_GASAC	G3PD40_GASAC	ENSGACP00000004285	ENSGACP00000015514	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SPT3 homolog, SAGA and STAGA complex component.	0.499
G3NG30_GASAC	G3PLL3_GASAC	ENSGACP00000004285	ENSGACP00000018494	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
G3NG30_GASAC	G3PZ04_GASAC	ENSGACP00000004285	ENSGACP00000022844	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.998
G3NG30_GASAC	G3QAL9_GASAC	ENSGACP00000004285	ENSGACP00000026935	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit.	0.999
G3NKQ0_GASAC	G3N6V1_GASAC	ENSGACP00000005913	ENSGACP00000001026	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.989
G3NKQ0_GASAC	G3NG30_GASAC	ENSGACP00000005913	ENSGACP00000004285	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999