G3N6Y6_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3N6Y6_GASAC

RNA binding motif protein 4.2. (378 aa)

Predicted Functional Partners:

G3NXK6_GASAC

0.722

G3P4B9_GASAC

0.705

G3PQ71_GASAC

0.694

G3PUV4_GASAC

0.690

G3PYU0_GASAC

0.684

G3PVS6_GASAC

0.673

G3PWU5_GASAC

0.654

G3NKU2_GASAC

0.646

G3PR19_GASAC

0.637

G3QCC3_GASAC

0.637

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N6Y6_GASAC	G3NKU2_GASAC	ENSGACP00000001061	ENSGACP00000005955	RNA binding motif protein 4.2.	Heterogeneous nuclear ribonucleoprotein A3.	0.646
G3N6Y6_GASAC	G3NXK6_GASAC	ENSGACP00000001061	ENSGACP00000010075	RNA binding motif protein 4.2.	Heterogeneous nuclear ribonucleoprotein K.	0.722
G3N6Y6_GASAC	G3P4B9_GASAC	ENSGACP00000001061	ENSGACP00000012442	RNA binding motif protein 4.2.	Uncharacterized protein.	0.705
G3N6Y6_GASAC	G3PQ71_GASAC	ENSGACP00000001061	ENSGACP00000019756	RNA binding motif protein 4.2.	RRM domain-containing protein.	0.694
G3N6Y6_GASAC	G3PR19_GASAC	ENSGACP00000001061	ENSGACP00000020054	RNA binding motif protein 4.2.	RRM domain-containing protein.	0.637
G3N6Y6_GASAC	G3PUV4_GASAC	ENSGACP00000001061	ENSGACP00000021391	RNA binding motif protein 4.2.	Heterogeneous nuclear ribonucleoprotein K, like.	0.690
G3N6Y6_GASAC	G3PVS6_GASAC	ENSGACP00000001061	ENSGACP00000021715	RNA binding motif protein 4.2.	Heterogeneous nuclear ribonucleoprotein A0b.	0.673
G3N6Y6_GASAC	G3PWU5_GASAC	ENSGACP00000001061	ENSGACP00000022084	RNA binding motif protein 4.2.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.654
G3N6Y6_GASAC	G3PYU0_GASAC	ENSGACP00000001061	ENSGACP00000022780	RNA binding motif protein 4.2.	RNA binding motif protein X-linked.	0.684
G3N6Y6_GASAC	G3QCC3_GASAC	ENSGACP00000001061	ENSGACP00000027539	RNA binding motif protein 4.2.	Uncharacterized protein.	0.637
G3NKU2_GASAC	G3N6Y6_GASAC	ENSGACP00000005955	ENSGACP00000001061	Heterogeneous nuclear ribonucleoprotein A3.	RNA binding motif protein 4.2.	0.646
G3NKU2_GASAC	G3NXK6_GASAC	ENSGACP00000005955	ENSGACP00000010075	Heterogeneous nuclear ribonucleoprotein A3.	Heterogeneous nuclear ribonucleoprotein K.	0.961
G3NKU2_GASAC	G3P4B9_GASAC	ENSGACP00000005955	ENSGACP00000012442	Heterogeneous nuclear ribonucleoprotein A3.	Uncharacterized protein.	0.857
G3NKU2_GASAC	G3PQ71_GASAC	ENSGACP00000005955	ENSGACP00000019756	Heterogeneous nuclear ribonucleoprotein A3.	RRM domain-containing protein.	0.743
G3NKU2_GASAC	G3PR19_GASAC	ENSGACP00000005955	ENSGACP00000020054	Heterogeneous nuclear ribonucleoprotein A3.	RRM domain-containing protein.	0.746
G3NKU2_GASAC	G3PUV4_GASAC	ENSGACP00000005955	ENSGACP00000021391	Heterogeneous nuclear ribonucleoprotein A3.	Heterogeneous nuclear ribonucleoprotein K, like.	0.961
G3NKU2_GASAC	G3PYU0_GASAC	ENSGACP00000005955	ENSGACP00000022780	Heterogeneous nuclear ribonucleoprotein A3.	RNA binding motif protein X-linked.	0.913
G3NKU2_GASAC	G3QCC3_GASAC	ENSGACP00000005955	ENSGACP00000027539	Heterogeneous nuclear ribonucleoprotein A3.	Uncharacterized protein.	0.725
G3NXK6_GASAC	G3N6Y6_GASAC	ENSGACP00000010075	ENSGACP00000001061	Heterogeneous nuclear ribonucleoprotein K.	RNA binding motif protein 4.2.	0.722
G3NXK6_GASAC	G3NKU2_GASAC	ENSGACP00000010075	ENSGACP00000005955	Heterogeneous nuclear ribonucleoprotein K.	Heterogeneous nuclear ribonucleoprotein A3.	0.961