STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3N6Z3_GASACSplicing factor 1. (576 aa)    
Predicted Functional Partners:
G3PR91_GASAC
Splicing factor 3a, subunit 2.
   
 0.991
G3Q648_GASAC
RNA binding motif protein 17.
   
 0.980
G3PDS4_GASAC
Splicing factor 3a, subunit 1.
   
 0.979
G3P8Z0_GASAC
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.976
G3PNF0_GASAC
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.976
G3P253_GASAC
Splicing factor 3b, subunit 1.
   
 0.973
G3N4K0_GASAC
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.972
G3NEB5_GASAC
RNA binding motif protein 39b.
   
 0.972
G3NGG6_GASAC
Uncharacterized protein.
   
 0.972
G3PA33_GASAC
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 
 0.963
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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