G3N781_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3N781_GASAC

FA complementation group D2. (1436 aa)

Predicted Functional Partners:

G3NR39_GASAC

0.999

G3NS19_GASAC

0.999

G3NVE5_GASAC

0.999

G3P4E5_GASAC

0.999

G3PC75_GASAC

0.999

G3PCM8_GASAC

0.999

G3PJG6_GASAC

0.999

G3NIF3_GASAC

0.998

G3NUR3_GASAC

0.998

G3P023_GASAC

0.998

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N781_GASAC	G3NIF3_GASAC	ENSGACP00000001158	ENSGACP00000005113	FA complementation group D2.	FA complementation group B.	0.998
G3N781_GASAC	G3NR39_GASAC	ENSGACP00000001158	ENSGACP00000007805	FA complementation group D2.	FA complementation group F.	0.999
G3N781_GASAC	G3NS19_GASAC	ENSGACP00000001158	ENSGACP00000008136	FA complementation group D2.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.999
G3N781_GASAC	G3NUR3_GASAC	ENSGACP00000001158	ENSGACP00000009082	FA complementation group D2.	Ubiquitin carboxyl-terminal hydrolase.	0.998
G3N781_GASAC	G3NVE5_GASAC	ENSGACP00000001158	ENSGACP00000009314	FA complementation group D2.	FA complementation group C.	0.999
G3N781_GASAC	G3P023_GASAC	ENSGACP00000001158	ENSGACP00000010946	FA complementation group D2.	FA complementation group E.	0.998
G3N781_GASAC	G3P4E5_GASAC	ENSGACP00000001158	ENSGACP00000012468	FA complementation group D2.	Uncharacterized protein.	0.999
G3N781_GASAC	G3PC75_GASAC	ENSGACP00000001158	ENSGACP00000015199	FA complementation group D2.	Tower domain-containing protein.	0.999
G3N781_GASAC	G3PCM8_GASAC	ENSGACP00000001158	ENSGACP00000015352	FA complementation group D2.	FA complementation group I.	0.999
G3N781_GASAC	G3PJG6_GASAC	ENSGACP00000001158	ENSGACP00000017746	FA complementation group D2.	FA complementation group L.	0.999
G3NIF3_GASAC	G3N781_GASAC	ENSGACP00000005113	ENSGACP00000001158	FA complementation group B.	FA complementation group D2.	0.998
G3NIF3_GASAC	G3NR39_GASAC	ENSGACP00000005113	ENSGACP00000007805	FA complementation group B.	FA complementation group F.	0.999
G3NIF3_GASAC	G3NS19_GASAC	ENSGACP00000005113	ENSGACP00000008136	FA complementation group B.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.759
G3NIF3_GASAC	G3NUR3_GASAC	ENSGACP00000005113	ENSGACP00000009082	FA complementation group B.	Ubiquitin carboxyl-terminal hydrolase.	0.723
G3NIF3_GASAC	G3NVE5_GASAC	ENSGACP00000005113	ENSGACP00000009314	FA complementation group B.	FA complementation group C.	0.999
G3NIF3_GASAC	G3P023_GASAC	ENSGACP00000005113	ENSGACP00000010946	FA complementation group B.	FA complementation group E.	0.999
G3NIF3_GASAC	G3P4E5_GASAC	ENSGACP00000005113	ENSGACP00000012468	FA complementation group B.	Uncharacterized protein.	0.999
G3NIF3_GASAC	G3PC75_GASAC	ENSGACP00000005113	ENSGACP00000015199	FA complementation group B.	Tower domain-containing protein.	0.710
G3NIF3_GASAC	G3PCM8_GASAC	ENSGACP00000005113	ENSGACP00000015352	FA complementation group B.	FA complementation group I.	0.998
G3NIF3_GASAC	G3PJG6_GASAC	ENSGACP00000005113	ENSGACP00000017746	FA complementation group B.	FA complementation group L.	0.999