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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3N7E4_GASACDEK proto-oncogene. (330 aa)    
Predicted Functional Partners:
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.913
G3PS70_GASAC
Uncharacterized protein.
    
 
 0.913
G3P253_GASAC
Splicing factor 3b, subunit 1.
   
 
 0.853
G3NXN9_GASAC
Bromodomain adjacent to zinc finger domain, 1B.
    
 0.831
G3QC25_GASAC
MYB binding protein (P160) 1a.
   
 
 0.819
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.812
G3NV40_GASAC
Excision repair cross-complementation group 6.
   
 0.777
G3PUA1_GASAC
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
     
 0.764
G3NIG5_GASAC
Helicase, lymphoid specific.
   
 0.763
G3PLQ5_GASAC
Chromodomain helicase DNA binding protein 1-like.
   
 0.753
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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