Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3N7E4_GASACDEK proto-oncogene. (330 aa)    
Predicted Functional Partners:
G3NXN9_GASAC
Bromodomain adjacent to zinc finger domain, 1B.
   
 0.983
G3P253_GASAC
Splicing factor 3b, subunit 1.
   
 0.919
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.918
G3PS70_GASAC
Uncharacterized protein.
    
 
 0.918
G3NAQ4_GASAC
Death-domain associated protein.
    
 
 0.912
G3QC25_GASAC
MYB binding protein (P160) 1a.
    
 0.899
SPOP
Speckle type BTB/POZ protein.
    
 
 0.876
G3NWJ7_GASAC
Speckle type BTB/POZ protein like b.
    
 
 0.876
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.859
G3Q530_GASAC
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 
 0.854
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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