G3N7F0_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3N7F0_GASAC

Sortilin-related VPS10 domain containing receptor 2. (966 aa)

Predicted Functional Partners:

G3P5W6_GASAC

0.752

G3PMC7_GASAC

0.711

G3N566_GASAC

0.688

G3NYI9_GASAC

0.688

G3NXV1_GASAC

0.679

G3PKG3_GASAC

0.628

G3Q8F1_GASAC

0.564

G3Q8F3_GASAC

0.564

G3P560_GASAC

0.554

G3NJM5_GASAC

0.544

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N566_GASAC	G3N7F0_GASAC	ENSGACP00000000436	ENSGACP00000001228	Sortilin.	Sortilin-related VPS10 domain containing receptor 2.	0.688
G3N566_GASAC	G3NJM5_GASAC	ENSGACP00000000436	ENSGACP00000005537	Sortilin.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.605
G3N566_GASAC	G3NXV1_GASAC	ENSGACP00000000436	ENSGACP00000010171	Sortilin.	Amyloid beta (A4) precursor-like protein 1.	0.516
G3N566_GASAC	G3NYI9_GASAC	ENSGACP00000000436	ENSGACP00000010409	Sortilin.	Sortilin.	0.901
G3N566_GASAC	G3P560_GASAC	ENSGACP00000000436	ENSGACP00000012733	Sortilin.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.945
G3N566_GASAC	G3P5W6_GASAC	ENSGACP00000000436	ENSGACP00000012989	Sortilin.	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	0.945
G3N566_GASAC	G3PKG3_GASAC	ENSGACP00000000436	ENSGACP00000018093	Sortilin.	Cyclin G associated kinase.	0.628
G3N566_GASAC	G3PMC7_GASAC	ENSGACP00000000436	ENSGACP00000018758	Sortilin.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.829
G3N566_GASAC	G3Q8F3_GASAC	ENSGACP00000000436	ENSGACP00000026167	Sortilin.	Sortilin.	0.902
G3N7F0_GASAC	G3N566_GASAC	ENSGACP00000001228	ENSGACP00000000436	Sortilin-related VPS10 domain containing receptor 2.	Sortilin.	0.688
G3N7F0_GASAC	G3NJM5_GASAC	ENSGACP00000001228	ENSGACP00000005537	Sortilin-related VPS10 domain containing receptor 2.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.544
G3N7F0_GASAC	G3NXV1_GASAC	ENSGACP00000001228	ENSGACP00000010171	Sortilin-related VPS10 domain containing receptor 2.	Amyloid beta (A4) precursor-like protein 1.	0.679
G3N7F0_GASAC	G3NYI9_GASAC	ENSGACP00000001228	ENSGACP00000010409	Sortilin-related VPS10 domain containing receptor 2.	Sortilin.	0.688
G3N7F0_GASAC	G3P560_GASAC	ENSGACP00000001228	ENSGACP00000012733	Sortilin-related VPS10 domain containing receptor 2.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.554
G3N7F0_GASAC	G3P5W6_GASAC	ENSGACP00000001228	ENSGACP00000012989	Sortilin-related VPS10 domain containing receptor 2.	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	0.752
G3N7F0_GASAC	G3PKG3_GASAC	ENSGACP00000001228	ENSGACP00000018093	Sortilin-related VPS10 domain containing receptor 2.	Cyclin G associated kinase.	0.628
G3N7F0_GASAC	G3PMC7_GASAC	ENSGACP00000001228	ENSGACP00000018758	Sortilin-related VPS10 domain containing receptor 2.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.711
G3N7F0_GASAC	G3Q8F1_GASAC	ENSGACP00000001228	ENSGACP00000026165	Sortilin-related VPS10 domain containing receptor 2.	Uncharacterized protein.	0.564
G3N7F0_GASAC	G3Q8F3_GASAC	ENSGACP00000001228	ENSGACP00000026167	Sortilin-related VPS10 domain containing receptor 2.	Sortilin.	0.564
G3NJM5_GASAC	G3N566_GASAC	ENSGACP00000005537	ENSGACP00000000436	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Sortilin.	0.605