G3N896_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3N896_GASAC

VLIG-type G domain-containing protein. (845 aa)

Predicted Functional Partners:

G3PHC9_GASAC

0.791

G3NUP0_GASAC

0.505

G3P3U7_GASAC

0.505

TOM1L2

0.505

G3Q5T3_GASAC

0.505

G3Q5Z9_GASAC

0.462

NTS

0.448

G3NV10_GASAC

0.435

G3Q4H5_GASAC

0.435

G3NAW9_GASAC

0.427

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N896_GASAC	G3NAW9_GASAC	ENSGACP00000001530	ENSGACP00000002465	VLIG-type G domain-containing protein.	Mitochondrial ribosomal protein S24.	0.427
G3N896_GASAC	G3NUP0_GASAC	ENSGACP00000001530	ENSGACP00000009059	VLIG-type G domain-containing protein.	Target of myb1 membrane trafficking protein; Belongs to the TOM1 family.	0.505
G3N896_GASAC	G3NV10_GASAC	ENSGACP00000001530	ENSGACP00000009179	VLIG-type G domain-containing protein.	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	0.435
G3N896_GASAC	G3P3U7_GASAC	ENSGACP00000001530	ENSGACP00000012270	VLIG-type G domain-containing protein.	Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family.	0.505
G3N896_GASAC	G3PHC9_GASAC	ENSGACP00000001530	ENSGACP00000017004	VLIG-type G domain-containing protein.	HECT domain containing 1.	0.791
G3N896_GASAC	G3Q4H5_GASAC	ENSGACP00000001530	ENSGACP00000024779	VLIG-type G domain-containing protein.	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	0.435
G3N896_GASAC	G3Q5T3_GASAC	ENSGACP00000001530	ENSGACP00000025239	VLIG-type G domain-containing protein.	Uncharacterized protein; Belongs to the TOM1 family.	0.505
G3N896_GASAC	G3Q5Z9_GASAC	ENSGACP00000001530	ENSGACP00000025305	VLIG-type G domain-containing protein.	HAUS augmin-like complex, subunit 3.	0.462
G3N896_GASAC	NTS	ENSGACP00000001530	ENSGACP00000012593	VLIG-type G domain-containing protein.	Neurotensin.	0.448
G3N896_GASAC	TOM1L2	ENSGACP00000001530	ENSGACP00000015957	VLIG-type G domain-containing protein.	Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family.	0.505
G3NAW9_GASAC	G3N896_GASAC	ENSGACP00000002465	ENSGACP00000001530	Mitochondrial ribosomal protein S24.	VLIG-type G domain-containing protein.	0.427
G3NUP0_GASAC	G3N896_GASAC	ENSGACP00000009059	ENSGACP00000001530	Target of myb1 membrane trafficking protein; Belongs to the TOM1 family.	VLIG-type G domain-containing protein.	0.505
G3NV10_GASAC	G3N896_GASAC	ENSGACP00000009179	ENSGACP00000001530	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	VLIG-type G domain-containing protein.	0.435
G3NV10_GASAC	G3Q4H5_GASAC	ENSGACP00000009179	ENSGACP00000024779	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	0.901
G3P3U7_GASAC	G3N896_GASAC	ENSGACP00000012270	ENSGACP00000001530	Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family.	VLIG-type G domain-containing protein.	0.505
G3PHC9_GASAC	G3N896_GASAC	ENSGACP00000017004	ENSGACP00000001530	HECT domain containing 1.	VLIG-type G domain-containing protein.	0.791
G3Q4H5_GASAC	G3N896_GASAC	ENSGACP00000024779	ENSGACP00000001530	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	VLIG-type G domain-containing protein.	0.435
G3Q4H5_GASAC	G3NV10_GASAC	ENSGACP00000024779	ENSGACP00000009179	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	0.901
G3Q5T3_GASAC	G3N896_GASAC	ENSGACP00000025239	ENSGACP00000001530	Uncharacterized protein; Belongs to the TOM1 family.	VLIG-type G domain-containing protein.	0.505
G3Q5Z9_GASAC	G3N896_GASAC	ENSGACP00000025305	ENSGACP00000001530	HAUS augmin-like complex, subunit 3.	VLIG-type G domain-containing protein.	0.462