G3N8S0_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3N8S0_GASAC

FAM35_C domain-containing protein. (313 aa)

Predicted Functional Partners:

G3NP81_GASAC

0.949

G3N7U0_GASAC

0.913

G3N883_GASAC

0.733

G3P176_GASAC

0.423

G3NCJ2_GASAC

0.417

G3PA97_GASAC

0.412

G3NTA5_GASAC

0.405

G3PUF7_GASAC

0.404

G3Q5Y7_GASAC

0.404

G3PEE9_GASAC

0.403

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N7U0_GASAC	G3N8S0_GASAC	ENSGACP00000001374	ENSGACP00000001706	Zgc:101664.	FAM35_C domain-containing protein.	0.913
G3N7U0_GASAC	G3NP81_GASAC	ENSGACP00000001374	ENSGACP00000007145	Zgc:101664.	Mitotic arrest deficient 2 like 2.	0.942
G3N7U0_GASAC	G3P176_GASAC	ENSGACP00000001374	ENSGACP00000011349	Zgc:101664.	Replication timing regulatory factor 1.	0.554
G3N883_GASAC	G3N8S0_GASAC	ENSGACP00000001517	ENSGACP00000001706	Uncharacterized protein.	FAM35_C domain-containing protein.	0.733
G3N883_GASAC	G3NP81_GASAC	ENSGACP00000001517	ENSGACP00000007145	Uncharacterized protein.	Mitotic arrest deficient 2 like 2.	0.531
G3N883_GASAC	G3NTA5_GASAC	ENSGACP00000001517	ENSGACP00000008573	Uncharacterized protein.	DNA polymerase.	0.699
G3N883_GASAC	G3P176_GASAC	ENSGACP00000001517	ENSGACP00000011349	Uncharacterized protein.	Replication timing regulatory factor 1.	0.517
G3N8S0_GASAC	G3N7U0_GASAC	ENSGACP00000001706	ENSGACP00000001374	FAM35_C domain-containing protein.	Zgc:101664.	0.913
G3N8S0_GASAC	G3N883_GASAC	ENSGACP00000001706	ENSGACP00000001517	FAM35_C domain-containing protein.	Uncharacterized protein.	0.733
G3N8S0_GASAC	G3NCJ2_GASAC	ENSGACP00000001706	ENSGACP00000003042	FAM35_C domain-containing protein.	DUF3883 domain-containing protein.	0.417
G3N8S0_GASAC	G3NP81_GASAC	ENSGACP00000001706	ENSGACP00000007145	FAM35_C domain-containing protein.	Mitotic arrest deficient 2 like 2.	0.949
G3N8S0_GASAC	G3NTA5_GASAC	ENSGACP00000001706	ENSGACP00000008573	FAM35_C domain-containing protein.	DNA polymerase.	0.405
G3N8S0_GASAC	G3P176_GASAC	ENSGACP00000001706	ENSGACP00000011349	FAM35_C domain-containing protein.	Replication timing regulatory factor 1.	0.423
G3N8S0_GASAC	G3PA97_GASAC	ENSGACP00000001706	ENSGACP00000014521	FAM35_C domain-containing protein.	Uncharacterized protein.	0.412
G3N8S0_GASAC	G3PEE9_GASAC	ENSGACP00000001706	ENSGACP00000015973	FAM35_C domain-containing protein.	RAD52 homolog, DNA repair protein.	0.403
G3N8S0_GASAC	G3PUF7_GASAC	ENSGACP00000001706	ENSGACP00000021244	FAM35_C domain-containing protein.	Polymerase (DNA directed), theta.	0.404
G3N8S0_GASAC	G3Q5Y7_GASAC	ENSGACP00000001706	ENSGACP00000025293	FAM35_C domain-containing protein.	POLAc domain-containing protein.	0.404
G3NCJ2_GASAC	G3N8S0_GASAC	ENSGACP00000003042	ENSGACP00000001706	DUF3883 domain-containing protein.	FAM35_C domain-containing protein.	0.417
G3NP81_GASAC	G3N7U0_GASAC	ENSGACP00000007145	ENSGACP00000001374	Mitotic arrest deficient 2 like 2.	Zgc:101664.	0.942
G3NP81_GASAC	G3N883_GASAC	ENSGACP00000007145	ENSGACP00000001517	Mitotic arrest deficient 2 like 2.	Uncharacterized protein.	0.531