G3N8U7_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3N8U7_GASAC

Uncharacterized protein. (247 aa)

Predicted Functional Partners:

G3ND06_GASAC

0.789

G3QAL9_GASAC

0.762

G3PUD8_GASAC

0.759

G3NT27_GASAC

0.754

G3N9B3_GASAC

0.738

G3Q4N9_GASAC

0.730

G3NEU5_GASAC

0.700

G3NF51_GASAC

0.694

G3PGG0_GASAC

0.676

G3NC28_GASAC

0.664

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N8U7_GASAC	G3N9B3_GASAC	ENSGACP00000001734	ENSGACP00000001903	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.738
G3N8U7_GASAC	G3NC28_GASAC	ENSGACP00000001734	ENSGACP00000002877	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.664
G3N8U7_GASAC	G3ND06_GASAC	ENSGACP00000001734	ENSGACP00000003206	Uncharacterized protein.	RNA polymerase I and III subunit C.	0.789
G3N8U7_GASAC	G3NEU5_GASAC	ENSGACP00000001734	ENSGACP00000003846	Uncharacterized protein.	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.	0.700
G3N8U7_GASAC	G3NF51_GASAC	ENSGACP00000001734	ENSGACP00000003952	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.694
G3N8U7_GASAC	G3NT27_GASAC	ENSGACP00000001734	ENSGACP00000008495	Uncharacterized protein.	TWIST neighbor.	0.754
G3N8U7_GASAC	G3PGG0_GASAC	ENSGACP00000001734	ENSGACP00000016684	Uncharacterized protein.	CD3e molecule, epsilon associated protein.	0.676
G3N8U7_GASAC	G3PUD8_GASAC	ENSGACP00000001734	ENSGACP00000021225	Uncharacterized protein.	RNA polymerase I subunit E.	0.759
G3N8U7_GASAC	G3Q4N9_GASAC	ENSGACP00000001734	ENSGACP00000024843	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.730
G3N8U7_GASAC	G3QAL9_GASAC	ENSGACP00000001734	ENSGACP00000026935	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.762
G3N9B3_GASAC	G3N8U7_GASAC	ENSGACP00000001903	ENSGACP00000001734	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.738
G3N9B3_GASAC	G3NC28_GASAC	ENSGACP00000001903	ENSGACP00000002877	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.926
G3N9B3_GASAC	G3ND06_GASAC	ENSGACP00000001903	ENSGACP00000003206	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RNA polymerase I and III subunit C.	0.999
G3N9B3_GASAC	G3NF51_GASAC	ENSGACP00000001903	ENSGACP00000003952	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
G3N9B3_GASAC	G3NT27_GASAC	ENSGACP00000001903	ENSGACP00000008495	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	TWIST neighbor.	0.999
G3N9B3_GASAC	G3PGG0_GASAC	ENSGACP00000001903	ENSGACP00000016684	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	CD3e molecule, epsilon associated protein.	0.999
G3N9B3_GASAC	G3PUD8_GASAC	ENSGACP00000001903	ENSGACP00000021225	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RNA polymerase I subunit E.	0.999
G3N9B3_GASAC	G3Q4N9_GASAC	ENSGACP00000001903	ENSGACP00000024843	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
G3N9B3_GASAC	G3QAL9_GASAC	ENSGACP00000001903	ENSGACP00000026935	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Transcription initiation factor TFIID subunit.	0.784
G3NC28_GASAC	G3N8U7_GASAC	ENSGACP00000002877	ENSGACP00000001734	Polymerase (RNA) II (DNA directed) polypeptide C.	Uncharacterized protein.	0.664