G3N8W5_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G3N8W5_GASAC

Si:dkey-174n20.1. (266 aa)

Predicted Functional Partners:

G3PMS6_GASAC

0.683

G3Q1Z7_GASAC

0.607

G3PMT0_GASAC

0.599

COQ3

0.591

G3N8Z7_GASAC

0.590

FDX1

0.590

G3Q784_GASAC

0.590

G3NLM5_GASAC

0.581

G3Q4Q9_GASAC

0.577

G3P8T2_GASAC

0.572

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COQ3	FDX1	ENSGACP00000006584	ENSGACP00000018747	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Ferredoxin 1.	0.665
COQ3	G3N8W5_GASAC	ENSGACP00000006584	ENSGACP00000001752	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Si:dkey-174n20.1.	0.591
COQ3	G3PMS6_GASAC	ENSGACP00000006584	ENSGACP00000018909	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.504
COQ3	G3PMT0_GASAC	ENSGACP00000006584	ENSGACP00000018913	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Aminoadipate-semialdehyde dehydrogenase.	0.410
COQ3	G3Q784_GASAC	ENSGACP00000006584	ENSGACP00000025744	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Ferredoxin 2.	0.665
FDX1	COQ3	ENSGACP00000018747	ENSGACP00000006584	Ferredoxin 1.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.665
FDX1	G3N8W5_GASAC	ENSGACP00000018747	ENSGACP00000001752	Ferredoxin 1.	Si:dkey-174n20.1.	0.590
FDX1	G3PMS6_GASAC	ENSGACP00000018747	ENSGACP00000018909	Ferredoxin 1.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.953
FDX1	G3Q1Z7_GASAC	ENSGACP00000018747	ENSGACP00000023896	Ferredoxin 1.	Enoyl-CoA delta isomerase 2.	0.668
G3N8W5_GASAC	COQ3	ENSGACP00000001752	ENSGACP00000006584	Si:dkey-174n20.1.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.591
G3N8W5_GASAC	FDX1	ENSGACP00000001752	ENSGACP00000018747	Si:dkey-174n20.1.	Ferredoxin 1.	0.590
G3N8W5_GASAC	G3N8Z7_GASAC	ENSGACP00000001752	ENSGACP00000001784	Si:dkey-174n20.1.	Crystallin, lambda 1.	0.590
G3N8W5_GASAC	G3NLM5_GASAC	ENSGACP00000001752	ENSGACP00000006238	Si:dkey-174n20.1.	Stomatin (EPB72)-like 1.	0.581
G3N8W5_GASAC	G3P8T2_GASAC	ENSGACP00000001752	ENSGACP00000014006	Si:dkey-174n20.1.	Isochorismatase domain containing 2.	0.572
G3N8W5_GASAC	G3PMS6_GASAC	ENSGACP00000001752	ENSGACP00000018909	Si:dkey-174n20.1.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.683
G3N8W5_GASAC	G3PMT0_GASAC	ENSGACP00000001752	ENSGACP00000018913	Si:dkey-174n20.1.	Aminoadipate-semialdehyde dehydrogenase.	0.599
G3N8W5_GASAC	G3Q1Z7_GASAC	ENSGACP00000001752	ENSGACP00000023896	Si:dkey-174n20.1.	Enoyl-CoA delta isomerase 2.	0.607
G3N8W5_GASAC	G3Q4Q9_GASAC	ENSGACP00000001752	ENSGACP00000024863	Si:dkey-174n20.1.	Triokinase/FMN cyclase.	0.577
G3N8W5_GASAC	G3Q784_GASAC	ENSGACP00000001752	ENSGACP00000025744	Si:dkey-174n20.1.	Ferredoxin 2.	0.590
G3N8Z7_GASAC	G3N8W5_GASAC	ENSGACP00000001784	ENSGACP00000001752	Crystallin, lambda 1.	Si:dkey-174n20.1.	0.590