G3N9I3_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G3N9I3_GASAC

Myb-like, SWIRM and MPN domains 1. (795 aa)

Predicted Functional Partners:

G3NMN1_GASAC

0.998

G3P1Q7_GASAC

0.998

G3PCG6_GASAC

0.990

G3PET1_GASAC

0.987

G3NNG5_GASAC

0.983

G3P3P2_GASAC

0.979

G3PT17_GASAC

0.978

G3PUL8_GASAC

0.978

G3NDU6_GASAC

0.977

G3NTT6_GASAC

0.977

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N9I3_GASAC	G3NDU6_GASAC	ENSGACP00000001973	ENSGACP00000003496	Myb-like, SWIRM and MPN domains 1.	Proteasome subunit beta 2.	0.977
G3N9I3_GASAC	G3NMN1_GASAC	ENSGACP00000001973	ENSGACP00000006594	Myb-like, SWIRM and MPN domains 1.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.998
G3N9I3_GASAC	G3NNG5_GASAC	ENSGACP00000001973	ENSGACP00000006879	Myb-like, SWIRM and MPN domains 1.	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.	0.983
G3N9I3_GASAC	G3NTT6_GASAC	ENSGACP00000001973	ENSGACP00000008754	Myb-like, SWIRM and MPN domains 1.	Proteasome subunit alpha type.	0.977
G3N9I3_GASAC	G3P1Q7_GASAC	ENSGACP00000001973	ENSGACP00000011530	Myb-like, SWIRM and MPN domains 1.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.998
G3N9I3_GASAC	G3P3P2_GASAC	ENSGACP00000001973	ENSGACP00000012215	Myb-like, SWIRM and MPN domains 1.	Proteasome 26S subunit, non-ATPase 6.	0.979
G3N9I3_GASAC	G3PCG6_GASAC	ENSGACP00000001973	ENSGACP00000015290	Myb-like, SWIRM and MPN domains 1.	Ribosomal protein S27a.	0.990
G3N9I3_GASAC	G3PET1_GASAC	ENSGACP00000001973	ENSGACP00000016105	Myb-like, SWIRM and MPN domains 1.	Proteasome 26S subunit, non-ATPase 7.	0.987
G3N9I3_GASAC	G3PT17_GASAC	ENSGACP00000001973	ENSGACP00000020753	Myb-like, SWIRM and MPN domains 1.	Proteasome 26S subunit, non-ATPase 13.	0.978
G3N9I3_GASAC	G3PUL8_GASAC	ENSGACP00000001973	ENSGACP00000021305	Myb-like, SWIRM and MPN domains 1.	Proteasome 26S subunit, ATPase 3.	0.978
G3NDU6_GASAC	G3N9I3_GASAC	ENSGACP00000003496	ENSGACP00000001973	Proteasome subunit beta 2.	Myb-like, SWIRM and MPN domains 1.	0.977
G3NDU6_GASAC	G3NNG5_GASAC	ENSGACP00000003496	ENSGACP00000006879	Proteasome subunit beta 2.	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.	0.999
G3NDU6_GASAC	G3NTT6_GASAC	ENSGACP00000003496	ENSGACP00000008754	Proteasome subunit beta 2.	Proteasome subunit alpha type.	0.999
G3NDU6_GASAC	G3P3P2_GASAC	ENSGACP00000003496	ENSGACP00000012215	Proteasome subunit beta 2.	Proteasome 26S subunit, non-ATPase 6.	0.999
G3NDU6_GASAC	G3PCG6_GASAC	ENSGACP00000003496	ENSGACP00000015290	Proteasome subunit beta 2.	Ribosomal protein S27a.	0.980
G3NDU6_GASAC	G3PET1_GASAC	ENSGACP00000003496	ENSGACP00000016105	Proteasome subunit beta 2.	Proteasome 26S subunit, non-ATPase 7.	0.999
G3NDU6_GASAC	G3PT17_GASAC	ENSGACP00000003496	ENSGACP00000020753	Proteasome subunit beta 2.	Proteasome 26S subunit, non-ATPase 13.	0.999
G3NDU6_GASAC	G3PUL8_GASAC	ENSGACP00000003496	ENSGACP00000021305	Proteasome subunit beta 2.	Proteasome 26S subunit, ATPase 3.	0.999
G3NMN1_GASAC	G3N9I3_GASAC	ENSGACP00000006594	ENSGACP00000001973	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	Myb-like, SWIRM and MPN domains 1.	0.998
G3NMN1_GASAC	G3P1Q7_GASAC	ENSGACP00000006594	ENSGACP00000011530	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.956