Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
G3N9L3_GASACArginine and glutamate rich 1a. (192 aa)    
Predicted Functional Partners:
G3NSE6_GASAC
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.905
G3N9E8_GASAC
Uncharacterized protein.
   
   0.844
PUF60
Poly-U binding splicing factor b.
   
   0.844
G3NBG9_GASAC
Calcium homeostasis endoplasmic reticulum protein.
   
   0.839
G3N5K7_GASAC
Small nuclear ribonucleoprotein 70 (U1).
   
 
 0.835
G3QBM3_GASAC
Small nuclear ribonucleoprotein 35 (U11/U12).
   
 
 0.835
G3NMN5_GASAC
PNN-interacting serine/arginine-rich protein.
   
   0.832
G3PMH0_GASAC
Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.
    
 0.827
G3PR91_GASAC
Splicing factor 3a, subunit 2.
    
   0.815
G3PGD1_GASAC
LUC7-like 3 pre-mRNA splicing factor.
   
 
 0.808
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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