STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3NBR7_GASACPseudouridylate synthase 3. (462 aa)    
Predicted Functional Partners:
G3PRQ2_GASAC
TruB pseudouridine (psi) synthase family member 1.
  
 0.903
G3N9C1_GASAC
TruB pseudouridine (psi) synthase family member 2.
  
 0.883
G3NKC3_GASAC
Dyskeratosis congenita 1, dyskerin.
  
 0.872
G3NFX5_GASAC
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.869
WDR4
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.856
G3NC28_GASAC
Polymerase (RNA) II (DNA directed) polypeptide C.
  
  
 0.841
G3ND06_GASAC
RNA polymerase I and III subunit C.
  
  
 0.841
G3NI79_GASAC
Pseudouridine synthase 7.
  
 
 0.839
G3N979_GASAC
Ribosomal RNA processing 1.
   
    0.834
G3P7P0_GASAC
Nucleolar protein 6.
   
   0.808
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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