G3NBU9_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

G3NBU9_GASAC

Vinculin b. (1065 aa)

Predicted Functional Partners:

G3Q3X8_GASAC

0.996

G3P931_GASAC

0.994

G3PVK4_GASAC

0.994

G3Q1L6_GASAC

0.991

G3Q378_GASAC

0.991

G3PEI1_GASAC

0.986

ACTN4

0.986

G3NRM5_GASAC

0.969

G3N8X9_GASAC

0.962

G3N8W8_GASAC

0.962

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN4	G3N8W8_GASAC	ENSGACP00000017379	ENSGACP00000001755	Actinin alpha 4.	Uncharacterized protein.	0.961
ACTN4	G3N8X9_GASAC	ENSGACP00000017379	ENSGACP00000000441	Actinin alpha 4.	Uncharacterized protein.	0.961
ACTN4	G3NBU9_GASAC	ENSGACP00000017379	ENSGACP00000002797	Actinin alpha 4.	Vinculin b.	0.986
ACTN4	G3NRM5_GASAC	ENSGACP00000017379	ENSGACP00000007992	Actinin alpha 4.	Catenin (cadherin-associated protein), beta 1.	0.581
ACTN4	G3PEI1_GASAC	ENSGACP00000017379	ENSGACP00000016005	Actinin alpha 4.	Actinin, alpha 1.	0.900
ACTN4	G3Q1L6_GASAC	ENSGACP00000017379	ENSGACP00000023764	Actinin alpha 4.	Catenin (cadherin-associated protein), alpha 2.	0.941
ACTN4	G3Q378_GASAC	ENSGACP00000017379	ENSGACP00000024328	Actinin alpha 4.	Catenin (cadherin-associated protein), alpha 1.	0.941
G3N8W8_GASAC	ACTN4	ENSGACP00000001755	ENSGACP00000017379	Uncharacterized protein.	Actinin alpha 4.	0.961
G3N8W8_GASAC	G3NBU9_GASAC	ENSGACP00000001755	ENSGACP00000002797	Uncharacterized protein.	Vinculin b.	0.962
G3N8W8_GASAC	G3NRM5_GASAC	ENSGACP00000001755	ENSGACP00000007992	Uncharacterized protein.	Catenin (cadherin-associated protein), beta 1.	0.499
G3N8W8_GASAC	G3P931_GASAC	ENSGACP00000001755	ENSGACP00000014105	Uncharacterized protein.	Talin 2b.	0.572
G3N8W8_GASAC	G3PEI1_GASAC	ENSGACP00000001755	ENSGACP00000016005	Uncharacterized protein.	Actinin, alpha 1.	0.961
G3N8W8_GASAC	G3PVK4_GASAC	ENSGACP00000001755	ENSGACP00000021643	Uncharacterized protein.	Talin 2a.	0.572
G3N8W8_GASAC	G3Q1L6_GASAC	ENSGACP00000001755	ENSGACP00000023764	Uncharacterized protein.	Catenin (cadherin-associated protein), alpha 2.	0.957
G3N8W8_GASAC	G3Q378_GASAC	ENSGACP00000001755	ENSGACP00000024328	Uncharacterized protein.	Catenin (cadherin-associated protein), alpha 1.	0.957
G3N8W8_GASAC	G3Q3X8_GASAC	ENSGACP00000001755	ENSGACP00000024582	Uncharacterized protein.	Talin 1.	0.572
G3N8X9_GASAC	ACTN4	ENSGACP00000000441	ENSGACP00000017379	Uncharacterized protein.	Actinin alpha 4.	0.961
G3N8X9_GASAC	G3NBU9_GASAC	ENSGACP00000000441	ENSGACP00000002797	Uncharacterized protein.	Vinculin b.	0.962
G3N8X9_GASAC	G3NRM5_GASAC	ENSGACP00000000441	ENSGACP00000007992	Uncharacterized protein.	Catenin (cadherin-associated protein), beta 1.	0.499
G3N8X9_GASAC	G3P931_GASAC	ENSGACP00000000441	ENSGACP00000014105	Uncharacterized protein.	Talin 2b.	0.572