G3NBX7_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3NBX7_GASAC

EDAR-associated death domain. (231 aa)

Predicted Functional Partners:

G3NU11_GASAC

0.952

G3PYF8_GASAC

0.932

G3NQE2_GASAC

0.776

G3P589_GASAC

0.776

G3NDN1_GASAC

0.755

G3PWU5_GASAC

0.665

G3NNR0_GASAC

0.661

G3PAY5_GASAC

0.661

G3PTC4_GASAC

0.661

G3NQR2_GASAC

0.655

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NBX7_GASAC	G3NDN1_GASAC	ENSGACP00000002825	ENSGACP00000003431	EDAR-associated death domain.	CCR4-NOT transcription complex, subunit 1.	0.755
G3NBX7_GASAC	G3NNR0_GASAC	ENSGACP00000002825	ENSGACP00000006974	EDAR-associated death domain.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.661
G3NBX7_GASAC	G3NQE2_GASAC	ENSGACP00000002825	ENSGACP00000007558	EDAR-associated death domain.	Pumilio RNA-binding family member 1.	0.776
G3NBX7_GASAC	G3NQR2_GASAC	ENSGACP00000002825	ENSGACP00000007678	EDAR-associated death domain.	TNF receptor-associated factor 7.	0.655
G3NBX7_GASAC	G3NU11_GASAC	ENSGACP00000002825	ENSGACP00000008829	EDAR-associated death domain.	Ectodysplasin A receptor.	0.952
G3NBX7_GASAC	G3P589_GASAC	ENSGACP00000002825	ENSGACP00000012762	EDAR-associated death domain.	Pumilio RNA-binding family member 2.	0.776
G3NBX7_GASAC	G3PAY5_GASAC	ENSGACP00000002825	ENSGACP00000014759	EDAR-associated death domain.	TNF receptor-associated factor.	0.661
G3NBX7_GASAC	G3PTC4_GASAC	ENSGACP00000002825	ENSGACP00000020860	EDAR-associated death domain.	TNF receptor-associated factor.	0.661
G3NBX7_GASAC	G3PWU5_GASAC	ENSGACP00000002825	ENSGACP00000022084	EDAR-associated death domain.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.665
G3NBX7_GASAC	G3PYF8_GASAC	ENSGACP00000002825	ENSGACP00000022648	EDAR-associated death domain.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.932
G3NDN1_GASAC	G3NBX7_GASAC	ENSGACP00000003431	ENSGACP00000002825	CCR4-NOT transcription complex, subunit 1.	EDAR-associated death domain.	0.755
G3NDN1_GASAC	G3NQE2_GASAC	ENSGACP00000003431	ENSGACP00000007558	CCR4-NOT transcription complex, subunit 1.	Pumilio RNA-binding family member 1.	0.675
G3NDN1_GASAC	G3P589_GASAC	ENSGACP00000003431	ENSGACP00000012762	CCR4-NOT transcription complex, subunit 1.	Pumilio RNA-binding family member 2.	0.675
G3NNR0_GASAC	G3NBX7_GASAC	ENSGACP00000006974	ENSGACP00000002825	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	EDAR-associated death domain.	0.661
G3NNR0_GASAC	G3PAY5_GASAC	ENSGACP00000006974	ENSGACP00000014759	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor.	0.679
G3NNR0_GASAC	G3PWU5_GASAC	ENSGACP00000006974	ENSGACP00000022084	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.842
G3NNR0_GASAC	G3PYF8_GASAC	ENSGACP00000006974	ENSGACP00000022648	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.945
G3NQE2_GASAC	G3NBX7_GASAC	ENSGACP00000007558	ENSGACP00000002825	Pumilio RNA-binding family member 1.	EDAR-associated death domain.	0.776
G3NQE2_GASAC	G3NDN1_GASAC	ENSGACP00000007558	ENSGACP00000003431	Pumilio RNA-binding family member 1.	CCR4-NOT transcription complex, subunit 1.	0.675
G3NQR2_GASAC	G3NBX7_GASAC	ENSGACP00000007678	ENSGACP00000002825	TNF receptor-associated factor 7.	EDAR-associated death domain.	0.655