STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3NC08_GASACProtein YIPF. (237 aa)    
Predicted Functional Partners:
G3PFA3_GASAC
Protein YIPF.
   
 
 0.835
G3PY41_GASAC
Yip1 interacting factor homolog A (S. cerevisiae).
   
 
 0.819
G3PX37_GASAC
Protein YIPF.
   
 
 0.809
G3N5Q9_GASAC
Protein YIPF.
   
 
 0.796
G3P054_GASAC
Yip1 interacting factor homolog B (S. cerevisiae).
   
 
 0.790
G3P597_GASAC
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.711
SPATA5
Spermatogenesis associated 5.
    
 0.711
G3PX92_GASAC
Spermatogenesis associated 5-like 1.
    
 0.711
G3Q4U8_GASAC
Zgc:136908; Belongs to the AAA ATPase family.
    
 0.711
G3Q366_GASAC
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 0.668
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.