STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3NCF6_GASACUncharacterized protein. (252 aa)    
Predicted Functional Partners:
G3NSE6_GASAC
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.892
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.873
G3PXQ8_GASAC
Zgc:153681.
   
 0.873
G3PU25_GASAC
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
  
 0.868
G3PZX4_GASAC
Small nuclear ribonucleoprotein Sm D3.
   
 0.861
G3PA33_GASAC
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.858
G3PTV6_GASAC
FIP1 like 1b (S. cerevisiae).
   
 0.858
G3PIM5_GASAC
Small nuclear ribonucleoprotein polypeptide G.
   
 0.854
G3Q9D2_GASAC
Small nuclear ribonucleoprotein polypeptide F.
   
 0.852
G3P253_GASAC
Splicing factor 3b, subunit 1.
   
 0.851
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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