Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSM10LSM10, U7 small nuclear RNA associated. (122 aa)    
Predicted Functional Partners:
G3PA33_GASAC
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
G3PIM5_GASAC
Small nuclear ribonucleoprotein polypeptide G.
   
 0.999
G3Q3D7_GASAC
LSM11, U7 small nuclear RNA associated.
    
 0.999
G3Q9D2_GASAC
Small nuclear ribonucleoprotein polypeptide F.
   
 0.999
G3NU46_GASAC
Small nuclear ribonucleoprotein Sm D2.
   
 0.996
G3PZX4_GASAC
Small nuclear ribonucleoprotein Sm D3.
   
 0.996
G3NG36_GASAC
Small nuclear ribonucleoprotein-associated protein.
   
 0.990
LSM3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.990
G3PYQ5_GASAC
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.978
G3NE42_GASAC
Symplekin.
    
 
 0.973
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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