Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
G3NCI3_GASACVPS8 subunit of CORVET complex. (1358 aa)    
Predicted Functional Partners:
G3PHS2_GASAC
VPS18 core subunit of CORVET and HOPS complexes.
   
 0.999
G3PRM1_GASAC
Transforming growth factor, beta receptor associated protein 1.
   
 0.999
G3PRQ7_GASAC
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
   
 0.999
G3Q9K7_GASAC
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
    
 0.999
G3PBK0_GASAC
VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.998
G3P7F0_GASAC
Si:ch211-266g18.9.
   
 0.990
G3NKF9_GASAC
Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.
   
0.978
G3NP54_GASAC
VPS39 subunit of HOPS complex.
   
 
 0.948
G3PZG6_GASAC
VPS33B late endosome and lysosome associated; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.914
G3NMN7_GASAC
RAB5A, member RAS oncogene family, a.
    
 0.818
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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