STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3NCW1_GASACHepatocyte nuclear factor 4, gamma. (474 aa)    
Predicted Functional Partners:
G3Q7H8_GASAC
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
    
 
 0.781
G3NRM9_GASAC
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.774
G3NW06_GASAC
Nuclear receptor subfamily 0, group B, member 2a.
   
0.774
G3PGQ4_GASAC
HNF1 homeobox a.
   
 0.728
G3PFG0_GASAC
Nuclear receptor corepressor 2.
    
 0.716
G3PUN8_GASAC
Ribosomal protein L9.
    
 0.716
G3QA56_GASAC
Uncharacterized protein.
    
 0.716
G3P3J6_GASAC
Proliferation-associated 2G4, b.
   
   0.700
G3NBJ1_GASAC
Uncharacterized protein.
    
 0.664
G3PM26_GASAC
Uncharacterized protein.
    
 0.664
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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