Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LRIT2Leucine rich repeat, Ig-like and transmembrane domains 2. (504 aa)    
Predicted Functional Partners:
G3ND14_GASAC
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
   
 0.752
G3P094_GASAC
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
   
 0.752
G3PVY8_GASAC
WD repeat domain 17.
      
 0.679
G3N4U6_GASAC
Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3; Belongs to the serpin family.
     
 0.651
G3PVG6_GASAC
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
    
 0.642
G3N6K2_GASAC
Ankyrin repeat domain 33Ab.
    
 0.567
G3P2R3_GASAC
Ankyrin repeat domain 33Aa.
    
 0.567
G3PCN3_GASAC
Potassium inwardly-rectifying channel, subfamily J, member 14.
      
 0.550
G3PJZ4_GASAC
Tetratricopeptide repeat domain 38.
      
 0.549
G3NKT1_GASAC
Lactamase, beta-like 1b.
   
 
 0.513
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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